Last updated: 2020-03-21

Checks: 1 1

Knit directory: sanger_rnaseq/analysis/

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Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    code/.DS_Store
    Ignored:    code/differential_expression/
    Ignored:    code/differential_phase/
    Ignored:    data/
    Ignored:    docs/.DS_Store
    Ignored:    docs/figure/.DS_Store
    Ignored:    docs/figure/neighboring_genes.Rmd/.DS_Store
    Ignored:    output/compare/
    Ignored:    output/ctss_clustering/
    Ignored:    output/differential_detection/
    Ignored:    output/differential_expression/
    Ignored:    output/differential_phase/
    Ignored:    output/extensive_transcription/
    Ignored:    output/final_utrs/
    Ignored:    output/gcbias/
    Ignored:    output/homopolymer_analysis/
    Ignored:    output/neighboring_genes/
    Ignored:    output/promoter_architecture/
    Ignored:    output/pseudogenes/
    Ignored:    output/tfbs_analysis/
    Ignored:    output/transcript_abundance/

Untracked files:
    Untracked:  _workflowr.yml
    Untracked:  code/pseudogenes.R
    Untracked:  docs/figure/tfbs_analysis.Rmd/
    Untracked:  figures/

Unstaged changes:
    Modified:   analysis/_site.yml
    Modified:   analysis/about.Rmd
    Modified:   analysis/analyze_neighboring_genes.Rmd
    Modified:   analysis/array_correlations.Rmd
    Modified:   analysis/calculate_transcript_abundance.Rmd
    Deleted:    analysis/chunks.R
    Modified:   analysis/comparing_utrs.Rmd
    Modified:   analysis/ctss_clustering.Rmd
    Modified:   analysis/dynamic_tss.Rmd
    Modified:   analysis/extensive_transcription.Rmd
    Modified:   analysis/final_utrs.Rmd
    Modified:   analysis/gcbias.Rmd
    Modified:   analysis/index.Rmd
    Modified:   analysis/license.Rmd
    Modified:   analysis/process_neighboring_genes.Rmd
    Modified:   analysis/promoter_architecture.Rmd
    Modified:   analysis/strain_differential_detection.Rmd
    Modified:   analysis/strain_differential_expression.Rmd
    Modified:   analysis/strain_differential_phase.Rmd
    Modified:   analysis/tfbs_analysis.Rmd
    Modified:   code/differential_detection/detect_transcripts.R
    Modified:   code/figures.R
    Modified:   code/utils.R
    Deleted:    docs/Rplots.pdf

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File Version Author Date Message
html f59e2e3 Philipp Ross 2018-09-23 hellooooo
Rmd 0e2e80a thephilross 2017-03-03 Start workflowr project.

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