Last updated: 2020-03-21

Checks: 1 1

Knit directory: sanger_rnaseq/analysis/

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Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    code/.DS_Store
    Ignored:    code/differential_expression/
    Ignored:    code/differential_phase/
    Ignored:    data/
    Ignored:    docs/.DS_Store
    Ignored:    docs/figure/.DS_Store
    Ignored:    docs/figure/neighboring_genes.Rmd/.DS_Store
    Ignored:    output/compare/
    Ignored:    output/ctss_clustering/
    Ignored:    output/differential_detection/
    Ignored:    output/differential_expression/
    Ignored:    output/differential_phase/
    Ignored:    output/extensive_transcription/
    Ignored:    output/final_utrs/
    Ignored:    output/gcbias/
    Ignored:    output/homopolymer_analysis/
    Ignored:    output/neighboring_genes/
    Ignored:    output/promoter_architecture/
    Ignored:    output/pseudogenes/
    Ignored:    output/tfbs_analysis/
    Ignored:    output/transcript_abundance/

Untracked files:
    Untracked:  _workflowr.yml
    Untracked:  code/pseudogenes.R
    Untracked:  docs/figure/tfbs_analysis.Rmd/
    Untracked:  figures/

Unstaged changes:
    Modified:   README.md
    Modified:   analysis/_site.yml
    Modified:   analysis/about.Rmd
    Modified:   analysis/analyze_neighboring_genes.Rmd
    Modified:   analysis/array_correlations.Rmd
    Modified:   analysis/calculate_transcript_abundance.Rmd
    Deleted:    analysis/chunks.R
    Modified:   analysis/comparing_utrs.Rmd
    Modified:   analysis/ctss_clustering.Rmd
    Modified:   analysis/dynamic_tss.Rmd
    Modified:   analysis/extensive_transcription.Rmd
    Modified:   analysis/final_utrs.Rmd
    Modified:   analysis/gcbias.Rmd
    Modified:   analysis/index.Rmd
    Modified:   analysis/license.Rmd
    Modified:   analysis/process_neighboring_genes.Rmd
    Modified:   analysis/promoter_architecture.Rmd
    Modified:   analysis/strain_differential_detection.Rmd
    Modified:   analysis/strain_differential_expression.Rmd
    Modified:   analysis/strain_differential_phase.Rmd
    Modified:   analysis/tfbs_analysis.Rmd
    Modified:   code/differential_detection/detect_transcripts.R
    Modified:   code/figures.R
    Modified:   code/utils.R
    Deleted:    docs/Rplots.pdf

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File Version Author Date Message
html f59e2e3 Philipp Ross 2018-09-23 hellooooo
Rmd 0e2e80a thephilross 2017-03-03 Start workflowr project.

Describe your project.